Variant report

Variant	rs28710350
Chromosome Location	chr14:69531049-69531050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69527620..69530017-chr14:69530767..69532829,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10129883	1.00[MEX][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs10134594	1.00[MEX][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs10134889	1.00[AMR][1000 genomes]
rs10145145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146434	0.85[AMR][1000 genomes]
rs10150736	0.85[AMR][1000 genomes]
rs10498526	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs2877524	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28799989	0.89[AFR][1000 genomes]
rs57723249	0.85[AMR][1000 genomes]
rs61160887	1.00[AMR][1000 genomes]
rs7144307	0.92[YRI][hapmap]
rs7145079	1.00[MEX][hapmap]
rs74059868	0.85[AMR][1000 genomes]
rs74059870	0.85[AMR][1000 genomes]
rs908484	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs9323526	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69518000-69533800	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
4	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:69519200-69531600	Strong transcription	Fetal Thymus	thymus
8	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
9	chr14:69519400-69534200	Strong transcription	Primary B cells from cord blood	blood
10	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:69519800-69531600	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:69520000-69534800	Strong transcription	Placenta	Placenta
13	chr14:69520200-69531600	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:69520200-69531800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:69520200-69532200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:69521000-69540600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:69522200-69539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:69522600-69545600	Weak transcription	Pancreas	Pancrea
21	chr14:69523200-69532200	Strong transcription	Fetal Muscle Leg	muscle
22	chr14:69523400-69535600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:69523400-69535800	Weak transcription	Aorta	Aorta
24	chr14:69523600-69535400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:69523600-69545600	Weak transcription	Right Ventricle	heart
26	chr14:69523600-69550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr14:69523600-69553400	Weak transcription	Brain Angular Gyrus	brain
28	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:69523800-69535800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:69524000-69532200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
33	chr14:69525000-69531200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:69525800-69531800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr14:69525800-69531800	Strong transcription	Fetal Lung	lung
36	chr14:69525800-69534400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:69526000-69532400	Strong transcription	GM12878-XiMat	blood
38	chr14:69526200-69532600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:69526600-69531800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:69526800-69545600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:69527000-69531600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:69527000-69535600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:69527000-69545800	Weak transcription	Psoas Muscle	Psoas
44	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
45	chr14:69527200-69531800	Strong transcription	HSMM	muscle
46	chr14:69527200-69535000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:69527200-69535400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:69527200-69535600	Weak transcription	HUVEC	blood vessel
49	chr14:69527400-69535600	Weak transcription	NHLF	lung
50	chr14:69527600-69532600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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