Variant report

Variant	rs10134594
Chromosome Location	chr14:69522062-69522063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69441719..69443220-chr14:69520758..69522938,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129883	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10134889	0.86[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138499	0.80[AFR][1000 genomes]
rs10145145	1.00[AMR][1000 genomes]
rs10146434	0.85[AMR][1000 genomes]
rs10150736	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10498526	1.00[MEX][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs12323321	0.85[AMR][1000 genomes]
rs28710350	1.00[MEX][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2877524	0.92[YRI][hapmap]
rs57723249	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61160887	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144307	0.84[YRI][hapmap]
rs7145079	1.00[MEX][hapmap]
rs74059868	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74059870	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs908484	1.00[MEX][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69516200-69541800	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69517000-69523200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:69517600-69528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:69518000-69533800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr14:69518200-69523000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
7	chr14:69518800-69522200	Enhancers	Fetal Heart	heart
8	chr14:69518800-69522200	Strong transcription	Gastric	stomach
9	chr14:69518800-69529200	Strong transcription	Fetal Brain Female	brain
10	chr14:69518800-69529200	Strong transcription	Fetal Stomach	stomach
11	chr14:69518800-69530000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr14:69518800-69530200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr14:69518800-69537000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr14:69519000-69522800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69519000-69522800	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:69519000-69524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:69519000-69524400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:69519000-69524800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr14:69519000-69525000	Strong transcription	Dnd41	blood
20	chr14:69519000-69537000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:69519000-69537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:69519200-69522200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:69519200-69522200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:69519200-69522400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:69519200-69522400	Strong transcription	NHLF	lung
26	chr14:69519200-69522800	Strong transcription	Fetal Muscle Leg	muscle
27	chr14:69519200-69523000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:69519200-69523000	Strong transcription	NHEK	skin
29	chr14:69519200-69523800	Strong transcription	Thymus	Thymus
30	chr14:69519200-69528600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:69519200-69531000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:69519200-69531600	Strong transcription	Fetal Thymus	thymus
33	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
34	chr14:69519400-69522200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:69519400-69522400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:69519400-69522800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:69519400-69522800	Strong transcription	Esophagus	oesophagus
38	chr14:69519400-69524800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:69519400-69525200	Strong transcription	GM12878-XiMat	blood
40	chr14:69519400-69534200	Strong transcription	Primary B cells from cord blood	blood
41	chr14:69519600-69522200	Weak transcription	K562	blood
42	chr14:69519600-69522400	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr14:69519600-69522400	Strong transcription	Rectal Smooth Muscle	rectum
44	chr14:69519600-69522600	Strong transcription	HMEC	breast
45	chr14:69519600-69523600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:69519600-69524800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:69519600-69524800	Strong transcription	HepG2	liver
48	chr14:69519600-69525000	Strong transcription	Fetal Lung	lung
49	chr14:69519600-69530800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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