Variant report

Variant	rs28404732
Chromosome Location	chr4:7838526-7838527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7832506..7835446-chr4:7836236..7839914,3	K562	blood:
2	chr4:7828803..7835270-chr4:7836618..7840776,8	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4296679	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355390	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4478189	0.83[EUR][1000 genomes]
rs4580651	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4689167	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4689168	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6844380	0.80[ASN][1000 genomes]
rs7434453	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3467547	chr4:7834952-7839350	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3467548	chr4:7834952-7839350	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3411064	chr4:7835752-7838650	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7821200-7859000	Weak transcription	Aorta	Aorta
2	chr4:7825400-7839400	Weak transcription	Pancreas	Pancrea
3	chr4:7825600-7852200	Weak transcription	Gastric	stomach
4	chr4:7825800-7854200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:7826000-7846000	Weak transcription	Stomach Mucosa	stomach
6	chr4:7826600-7842400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:7830400-7844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:7830400-7850000	Weak transcription	Right Ventricle	heart
9	chr4:7830400-7862600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:7830600-7842800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:7830600-7842800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:7830600-7843000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:7830600-7844200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:7830600-7844200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:7830600-7844600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:7830600-7845200	Weak transcription	Colonic Mucosa	Colon
17	chr4:7830600-7845800	Weak transcription	Brain Anterior Caudate	brain
18	chr4:7830600-7846400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:7830600-7855200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:7830600-7856200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:7830600-7857200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:7830600-7862200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:7830600-7862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:7830800-7838600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:7830800-7839000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:7830800-7842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:7830800-7842800	Weak transcription	Esophagus	oesophagus
28	chr4:7830800-7854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:7831000-7839000	Weak transcription	Adipose Nuclei	Adipose
30	chr4:7831000-7839200	Weak transcription	Fetal Brain Female	brain
31	chr4:7831600-7842800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:7831600-7845800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:7832200-7839200	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:7832200-7845600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:7832200-7845800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:7832200-7854000	Weak transcription	Brain Angular Gyrus	brain
37	chr4:7832600-7845600	Weak transcription	Small Intestine	intestine
38	chr4:7833000-7845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:7833600-7844200	Weak transcription	Left Ventricle	heart
40	chr4:7833600-7845600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:7833800-7839000	Weak transcription	Right Atrium	heart
42	chr4:7833800-7844200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:7833800-7845600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr4:7833800-7855200	Weak transcription	Spleen	Spleen
45	chr4:7834000-7839200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:7834000-7841400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:7834200-7838800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:7834200-7839000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:7834200-7839000	Strong transcription	Osteobl	bone
50	chr4:7834200-7841200	Weak transcription	HepG2	liver

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