Variant report

Variant	rs4689168
Chromosome Location	chr4:7843428-7843429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7828718..7832914-chr4:7842245..7845071,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12505487	1.00[YRI][hapmap]
rs16841283	1.00[YRI][hapmap]
rs28404732	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4074746	1.00[YRI][hapmap]
rs4296679	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes]
rs4355390	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4478189	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4580651	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4689167	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844380	0.87[YRI][hapmap]
rs7434453	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs877707	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7821200-7859000	Weak transcription	Aorta	Aorta
2	chr4:7825600-7852200	Weak transcription	Gastric	stomach
3	chr4:7825800-7854200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:7826000-7846000	Weak transcription	Stomach Mucosa	stomach
5	chr4:7830400-7844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:7830400-7850000	Weak transcription	Right Ventricle	heart
7	chr4:7830400-7862600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:7830600-7844200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:7830600-7844200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:7830600-7844600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:7830600-7845200	Weak transcription	Colonic Mucosa	Colon
12	chr4:7830600-7845800	Weak transcription	Brain Anterior Caudate	brain
13	chr4:7830600-7846400	Weak transcription	Brain Substantia Nigra	brain
14	chr4:7830600-7855200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:7830600-7856200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:7830600-7857200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:7830600-7862200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:7830600-7862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:7830800-7854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:7831600-7845800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:7832200-7845600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:7832200-7845800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:7832200-7854000	Weak transcription	Brain Angular Gyrus	brain
24	chr4:7832600-7845600	Weak transcription	Small Intestine	intestine
25	chr4:7833000-7845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:7833600-7844200	Weak transcription	Left Ventricle	heart
27	chr4:7833600-7845600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:7833800-7844200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr4:7833800-7845600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:7833800-7855200	Weak transcription	Spleen	Spleen
31	chr4:7834200-7843600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:7834200-7845400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr4:7834200-7845600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:7834200-7845600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:7834400-7845800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:7835400-7846000	Strong transcription	Fetal Intestine Small	intestine
37	chr4:7836400-7843600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:7836600-7855200	Weak transcription	Fetal Kidney	kidney
39	chr4:7838400-7844200	Weak transcription	Ovary	ovary
40	chr4:7838600-7843800	Weak transcription	Hela-S3	cervix
41	chr4:7839000-7844200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:7839600-7844200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:7839800-7844000	Weak transcription	Fetal Lung	lung
44	chr4:7839800-7844400	Weak transcription	Lung	lung
45	chr4:7840200-7845400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:7840400-7844800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:7840600-7844200	Weak transcription	Right Atrium	heart
48	chr4:7840600-7844600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:7840600-7853400	Weak transcription	Pancreas	Pancrea
50	chr4:7841400-7844200	Genic enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links