Variant report

Variant	rs28405352
Chromosome Location	chr15:31701308-31701309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11071009	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12101667	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28424256	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623689	0.89[AMR][1000 genomes]
rs28767583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28882498	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56258992	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57050120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57499356	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60349856	0.89[AMR][1000 genomes]
rs60455079	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61521461	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6493657	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71474660	0.84[AFR][1000 genomes]
rs7169573	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7174859	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7181163	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7182014	0.88[AFR][1000 genomes]
rs74010627	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs753636	0.82[AFR][1000 genomes]
rs8039613	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8039819	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041303	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042871	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31696400-31704200	Weak transcription	HMEC	breast
2	chr15:31696600-31704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:31698200-31704200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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