Variant report

Variant	rs61521461
Chromosome Location	chr15:31696405-31696406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31695571..31697566-chr15:31697893..31699568,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAN1-2	chr15:31696177-31696932	ENSG00000246638
2	lnc-FAN1-2	chr15:31695631-31697027	XLOC_011202
3	lnc-FAN1-2	chr15:31696171-31696932	XLOC_011202
4	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041455
5	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041456
6	lnc-FAN1-2	chr15:31695631-31696930	NONHSAT041462

No data

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11071009	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11855192	1.00[EUR][1000 genomes]
rs12101667	0.83[AFR][1000 genomes]
rs28405352	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28424256	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28623689	0.83[AMR][1000 genomes]
rs28767583	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28882498	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4319728	1.00[EUR][1000 genomes]
rs56108089	1.00[EUR][1000 genomes]
rs56258992	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57050120	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57499356	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60349856	0.83[AMR][1000 genomes]
rs60455079	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6493657	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71474660	0.83[AFR][1000 genomes]
rs7169573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7174859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181163	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7182014	0.88[AFR][1000 genomes]
rs74010627	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs753636	0.80[AFR][1000 genomes]
rs8039613	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8039819	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8041303	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8042812	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8042871	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31689600-31699000	Enhancers	Fetal Thymus	thymus
2	chr15:31691200-31697000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:31691400-31696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:31691400-31699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:31692000-31697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:31692000-31697600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:31692000-31697600	Weak transcription	Stomach Mucosa	stomach
8	chr15:31692200-31697000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:31692400-31697200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:31692400-31697200	Weak transcription	Thymus	Thymus
11	chr15:31692800-31696800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr15:31693200-31698800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:31693600-31698000	Enhancers	Lung	lung
14	chr15:31693800-31696600	Enhancers	NHDF-Ad	bronchial
15	chr15:31694600-31696600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:31694800-31698800	Enhancers	Dnd41	blood
17	chr15:31695200-31697200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:31695200-31698800	Enhancers	Hela-S3	cervix
19	chr15:31695600-31697600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:31695800-31696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:31695800-31696600	Enhancers	Osteobl	bone
22	chr15:31696000-31697600	Weak transcription	NHLF	lung
23	chr15:31696200-31696800	Enhancers	Gastric	stomach
24	chr15:31696200-31698400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr15:31696400-31697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:31696400-31697400	Weak transcription	NHEK	skin
27	chr15:31696400-31697800	Weak transcription	NH-A	brain
28	chr15:31696400-31700600	Enhancers	Primary B cells from cord blood	blood
29	chr15:31696400-31704200	Weak transcription	HMEC	breast

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