Variant report

Variant	rs28409765
Chromosome Location	chr4:95086808-95086809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10011158	0.98[ASN][1000 genomes]
rs10433965	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10433966	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10461170	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11508019	1.00[EUR][1000 genomes]
rs11938837	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28565382	0.90[ASN][1000 genomes]
rs28843992	0.88[ASN][1000 genomes]
rs56110205	0.95[ASN][1000 genomes]
rs7666276	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8180326	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8180329	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8180357	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95085200-95089800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:95085400-95087000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:95085800-95087200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:95086000-95089000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:95086400-95087000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:95086400-95087200	Enhancers	HepG2	liver
7	chr4:95086800-95087200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:95086800-95088600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:95086800-95089800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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