Variant report

Variant	rs28843992
Chromosome Location	chr4:95053584-95053585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95053044..95055234-chr4:95055745..95057514,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10011158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10029613	0.81[EUR][1000 genomes]
rs10433965	0.93[ASN][1000 genomes]
rs10433966	0.93[ASN][1000 genomes]
rs10461170	0.93[ASN][1000 genomes]
rs11936297	0.81[EUR][1000 genomes]
rs11936634	0.81[EUR][1000 genomes]
rs11938837	0.93[ASN][1000 genomes]
rs11943524	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1509944	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17301787	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17301828	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28409765	0.88[ASN][1000 genomes]
rs28565382	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28718177	0.81[AMR][1000 genomes]
rs28795707	0.84[AMR][1000 genomes]
rs56110205	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6810424	0.84[AMR][1000 genomes]
rs6813439	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6815436	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7666276	0.83[ASN][1000 genomes]
rs7698171	0.81[AMR][1000 genomes]
rs7699500	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8180326	0.93[ASN][1000 genomes]
rs8180329	0.93[ASN][1000 genomes]
rs8180357	0.93[ASN][1000 genomes]
rs9884263	0.81[AMR][1000 genomes]
rs9991386	0.81[EUR][1000 genomes]
rs9992620	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879617	chr4:94980768-95055821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95047000-95054000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:95052200-95061400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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