Variant report

Variant	rs11943524
Chromosome Location	chr4:95051911-95051912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10003038	0.81[AMR][1000 genomes]
rs10007463	0.83[AMR][1000 genomes]
rs10011158	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10014718	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs10016925	0.81[AMR][1000 genomes]
rs10018599	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs10022350	0.81[AMR][1000 genomes]
rs10022504	0.81[AMR][1000 genomes]
rs10025333	0.81[CEU][hapmap]
rs10029551	0.81[AMR][1000 genomes]
rs10030605	0.83[AMR][1000 genomes]
rs10516948	0.81[AMR][1000 genomes]
rs12186176	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs1509944	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17301787	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17301828	0.93[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17303283	0.81[AMR][1000 genomes]
rs17374902	0.81[AMR][1000 genomes]
rs17374964	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs28379069	0.81[AMR][1000 genomes]
rs28419190	0.81[AMR][1000 genomes]
rs28442028	0.81[AMR][1000 genomes]
rs28463840	0.80[EUR][1000 genomes]
rs28470897	0.81[AMR][1000 genomes]
rs28544271	0.83[AMR][1000 genomes]
rs28565382	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28638427	0.81[AMR][1000 genomes]
rs28718177	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28795707	0.86[AMR][1000 genomes]
rs28843992	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41275681	0.81[AMR][1000 genomes]
rs56110205	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6810424	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6811367	0.81[AMR][1000 genomes]
rs6813439	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6815436	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6844517	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs6848742	0.81[AMR][1000 genomes]
rs6857003	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs7653910	0.81[AMR][1000 genomes]
rs7654621	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs7660243	0.81[AMR][1000 genomes]
rs7661682	0.81[AMR][1000 genomes]
rs7698171	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7699500	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9307138	0.81[CEU][hapmap]
rs9884263	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9991214	0.81[CEU][hapmap]
rs9992255	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs9999328	0.81[AMR][1000 genomes]
rs9999656	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879617	chr4:94980768-95055821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95047000-95054000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links