Variant report

Variant	rs9999656
Chromosome Location	chr4:95193733-95193734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95189836..95191659-chr4:95193117..95195029,2	K562	blood:
2	chr4:95185463..95189802-chr4:95191422..95195146,3	K562	blood:

Variant related genes	Relation type
ENSG00000163104	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10003038	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10007463	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10013456	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10014718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10016925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10018599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10022350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10022504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10025333	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10025839	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10027578	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10029551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10030605	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10032125	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10084984	0.87[EUR][1000 genomes]
rs10516948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11943524	0.81[AMR][1000 genomes]
rs11947499	0.84[EUR][1000 genomes]
rs12186176	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1509944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17303283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17310498	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17374902	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17374964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28379069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28419190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28442028	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28470897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28521014	0.85[EUR][1000 genomes]
rs28544271	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28565382	0.83[AMR][1000 genomes]
rs28568937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28638427	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28650373	0.88[EUR][1000 genomes]
rs28676794	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28733161	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28795707	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41275681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6811367	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6813439	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6815436	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6817118	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6844517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6848288	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6848742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6857003	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7653910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7654621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7660243	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7661682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7698171	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7699500	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9307138	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9884428	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9991214	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992255	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9999328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130200-95194000	Weak transcription	Gastric	stomach
2	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
3	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
11	chr4:95161400-95207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:95163000-95200200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:95164400-95202800	Weak transcription	Pancreas	Pancrea
15	chr4:95164600-95200200	Weak transcription	Lung	lung
16	chr4:95164600-95200200	Weak transcription	Spleen	Spleen
17	chr4:95165000-95194200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:95165000-95198000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:95165400-95200000	Weak transcription	Fetal Brain Male	brain
20	chr4:95165400-95202800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:95167600-95200200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:95167800-95199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:95167800-95200200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:95167800-95200200	Weak transcription	Fetal Stomach	stomach
25	chr4:95167800-95212800	Weak transcription	Esophagus	oesophagus
26	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:95168600-95198200	Weak transcription	Psoas Muscle	Psoas
28	chr4:95172600-95198400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:95172600-95202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:95174400-95200000	Weak transcription	Fetal Kidney	kidney
31	chr4:95174400-95200200	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:95174600-95194000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:95174600-95198000	Weak transcription	Brain Anterior Caudate	brain
34	chr4:95174600-95199200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:95174600-95199800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:95174800-95195000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr4:95174800-95200000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:95174800-95200000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:95175000-95194800	Weak transcription	NHDF-Ad	bronchial
40	chr4:95175000-95195800	Weak transcription	NHLF	lung
41	chr4:95175000-95198800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:95175000-95198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr4:95175000-95198800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr4:95175000-95198800	Weak transcription	HSMMtube	muscle
45	chr4:95175600-95198000	Weak transcription	Brain Angular Gyrus	brain
46	chr4:95175800-95200200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:95177000-95214000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:95179800-95194000	Weak transcription	Left Ventricle	heart
49	chr4:95180400-95198000	Weak transcription	Fetal Heart	heart
50	chr4:95183200-95193800	Weak transcription	Fetal Intestine Small	intestine

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