Variant report

Variant	rs28650373
Chromosome Location	chr4:95251049-95251050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95249505..95251182-chr4:95251479..95254236,2	K562	blood:
2	chr4:95248410..95251790-chr4:95252473..95254073,3	MCF-7	breast:
3	chr4:95248894..95251809-chr4:95252736..95255390,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10003038	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10007463	0.84[EUR][1000 genomes]
rs10014718	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10016925	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10018599	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10022350	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10022504	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10025333	0.84[EUR][1000 genomes]
rs10025839	0.84[EUR][1000 genomes]
rs10027578	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10029551	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10030605	0.86[EUR][1000 genomes]
rs10032125	0.84[EUR][1000 genomes]
rs10084984	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10516948	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11947499	0.95[EUR][1000 genomes]
rs12186176	0.84[EUR][1000 genomes]
rs17303283	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17310498	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17374902	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17374964	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17376684	0.81[EUR][1000 genomes]
rs28379069	0.82[EUR][1000 genomes]
rs28419190	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28442028	0.82[EUR][1000 genomes]
rs28469826	0.80[EUR][1000 genomes]
rs28470897	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28521014	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28544271	0.82[EUR][1000 genomes]
rs28568937	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28581732	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28593606	0.82[EUR][1000 genomes]
rs28638427	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28676794	0.80[EUR][1000 genomes]
rs28713352	0.81[EUR][1000 genomes]
rs28795707	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs41275681	0.88[EUR][1000 genomes]
rs6811367	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6817118	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6844517	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6848140	0.81[AFR][1000 genomes]
rs6848742	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6857003	0.82[EUR][1000 genomes]
rs7653910	0.88[EUR][1000 genomes]
rs7654621	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7660243	0.82[EUR][1000 genomes]
rs7661682	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7685653	0.82[EUR][1000 genomes]
rs9307138	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9884428	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9991214	0.82[EUR][1000 genomes]
rs9992255	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9999328	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9999656	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95248800-95255000	Weak transcription	Adipose Nuclei	Adipose
2	chr4:95249000-95251600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:95249200-95251200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:95249200-95252600	Weak transcription	Gastric	stomach
6	chr4:95249400-95254000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:95249400-95254400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
9	chr4:95251000-95254000	Strong transcription	Primary hematopoietic stem cells	blood

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