Variant report

Variant	rs17376684
Chromosome Location	chr4:95270509-95270510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95262756..95265606-chr4:95268924..95270598,2	K562	blood:
2	chr4:95268744..95272012-chr4:95272731..95275757,3	K562	blood:

Variant related genes	Relation type
ENSG00000163106	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10003038	1.00[CEU][hapmap]
rs10007463	1.00[CEU][hapmap]
rs10014718	1.00[CEU][hapmap]
rs10016925	0.94[CEU][hapmap]
rs10018599	1.00[CEU][hapmap]
rs10025333	1.00[CEU][hapmap]
rs10027578	1.00[CEU][hapmap]
rs10029551	1.00[CEU][hapmap]
rs10030605	1.00[CEU][hapmap]
rs10032125	1.00[CEU][hapmap]
rs10084984	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10213307	0.85[EUR][1000 genomes]
rs10516948	1.00[CEU][hapmap]
rs11936526	1.00[ASN][1000 genomes]
rs11938688	1.00[ASN][1000 genomes]
rs11940271	1.00[ASN][1000 genomes]
rs11941178	1.00[ASN][1000 genomes]
rs11946025	1.00[ASN][1000 genomes]
rs11946095	1.00[ASN][1000 genomes]
rs11947499	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11947921	1.00[ASN][1000 genomes]
rs12108275	0.86[EUR][1000 genomes]
rs12108452	0.87[EUR][1000 genomes]
rs12186176	1.00[CEU][hapmap]
rs13435514	0.85[EUR][1000 genomes]
rs17021533	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17303283	1.00[CEU][hapmap]
rs17374902	1.00[CEU][hapmap]
rs17374964	1.00[CEU][hapmap]
rs17376943	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17623524	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28469826	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28497379	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28501313	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28508438	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581732	0.82[AMR][1000 genomes]
rs28593606	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28650373	0.81[EUR][1000 genomes]
rs28711614	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28713352	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28806238	0.85[EUR][1000 genomes]
rs36190715	1.00[ASN][1000 genomes]
rs56943028	0.88[EUR][1000 genomes]
rs57024887	1.00[ASN][1000 genomes]
rs57403425	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6827383	0.84[EUR][1000 genomes]
rs6827755	0.84[EUR][1000 genomes]
rs6828270	0.84[EUR][1000 genomes]
rs6834248	0.82[CEU][hapmap]
rs6844517	1.00[CEU][hapmap]
rs6848742	1.00[CEU][hapmap]
rs6857003	1.00[CEU][hapmap]
rs72888692	1.00[ASN][1000 genomes]
rs728989	0.83[CEU][hapmap]
rs7654621	1.00[CEU][hapmap]
rs7658873	0.87[EUR][1000 genomes]
rs7677981	0.86[EUR][1000 genomes]
rs7685653	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7692439	0.81[EUR][1000 genomes]
rs7696494	0.88[EUR][1000 genomes]
rs9307138	1.00[CEU][hapmap]
rs9307140	0.94[CEU][hapmap]
rs9991214	1.00[CEU][hapmap]
rs9992255	1.00[CEU][hapmap]
rs9993839	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95261400-95271400	Weak transcription	Dnd41	blood
2	chr4:95266800-95271200	Weak transcription	Placenta	Placenta
3	chr4:95268600-95271200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:95268600-95272800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:95269200-95272600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:95269800-95272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:95270000-95270600	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:95270200-95270800	Enhancers	K562	blood
9	chr4:95270200-95271200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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