Variant report

Variant	rs12108452
Chromosome Location	chr4:95300688-95300689
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10003038	0.91[CEU][hapmap]
rs10007463	0.93[CEU][hapmap]
rs10014718	0.94[CEU][hapmap]
rs10016925	0.94[CEU][hapmap]
rs10018599	0.94[CEU][hapmap]
rs10025333	0.94[CEU][hapmap]
rs10027578	0.93[CEU][hapmap]
rs10029551	0.93[CEU][hapmap]
rs10030605	0.93[CEU][hapmap]
rs10032125	0.93[CEU][hapmap]
rs10213307	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10516948	0.93[CEU][hapmap]
rs12108275	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186176	0.93[CEU][hapmap]
rs13434411	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13435514	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17021533	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17303283	0.93[CEU][hapmap]
rs17374902	0.93[CEU][hapmap]
rs17374964	0.93[CEU][hapmap]
rs17376684	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs17376943	0.96[EUR][1000 genomes]
rs17377951	0.88[EUR][1000 genomes]
rs17623524	0.96[EUR][1000 genomes]
rs28469826	0.84[EUR][1000 genomes]
rs28497379	0.96[EUR][1000 genomes]
rs28501313	0.96[EUR][1000 genomes]
rs28508438	0.84[EUR][1000 genomes]
rs28593606	0.86[EUR][1000 genomes]
rs28711614	0.83[EUR][1000 genomes]
rs28713352	0.87[EUR][1000 genomes]
rs28806238	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56943028	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57403425	0.95[EUR][1000 genomes]
rs6827383	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6827755	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6828270	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6844517	0.94[CEU][hapmap]
rs6848742	0.93[CEU][hapmap]
rs6857003	0.94[CEU][hapmap]
rs728989	0.82[CEU][hapmap]
rs7654621	0.94[CEU][hapmap]
rs7658873	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670371	0.85[EUR][1000 genomes]
rs7677981	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7685653	0.86[EUR][1000 genomes]
rs7692439	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7696494	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307138	0.94[CEU][hapmap]
rs9307140	1.00[CEU][hapmap]
rs9991214	0.93[CEU][hapmap]
rs9992255	0.94[CEU][hapmap]
rs9993839	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95291800-95306200	Weak transcription	K562	blood
2	chr4:95299600-95303200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links