Variant report

Variant	rs28497379
Chromosome Location	chr4:95283789-95283790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10213307	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12108275	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12108452	0.96[EUR][1000 genomes]
rs13435514	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17021533	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17376684	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17376943	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17377951	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17623524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28469826	0.86[EUR][1000 genomes]
rs28501313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28508438	0.84[EUR][1000 genomes]
rs28593606	0.87[EUR][1000 genomes]
rs28711614	0.85[EUR][1000 genomes]
rs28713352	0.87[EUR][1000 genomes]
rs28806238	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56943028	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57403425	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827383	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827755	0.95[EUR][1000 genomes]
rs6828270	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7658873	0.96[EUR][1000 genomes]
rs7670371	0.85[EUR][1000 genomes]
rs7677981	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7685653	0.87[EUR][1000 genomes]
rs7692439	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7696494	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9993839	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv519228	chr4:95277311-95292702	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95279400-95284400	Weak transcription	Osteobl	bone
2	chr4:95279400-95284600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:95279600-95284600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:95283200-95285200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:95283400-95284400	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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