Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95270791..95273174-chr4:95372376..95374373,2	K562	blood:
2	chr4:95268744..95272012-chr4:95272731..95275757,3	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10084984	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10213307	0.86[EUR][1000 genomes]
rs11947499	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12108275	0.87[EUR][1000 genomes]
rs12108452	0.86[EUR][1000 genomes]
rs13435514	0.86[EUR][1000 genomes]
rs17021533	0.87[EUR][1000 genomes]
rs17376684	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17376943	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17623524	0.87[EUR][1000 genomes]
rs28469826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28497379	0.87[EUR][1000 genomes]
rs28501313	0.87[EUR][1000 genomes]
rs28508438	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28568937	0.80[EUR][1000 genomes]
rs28581732	0.84[AMR][1000 genomes]
rs28593606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28650373	0.82[EUR][1000 genomes]
rs28711614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28713352	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28806238	0.86[EUR][1000 genomes]
rs56943028	0.87[EUR][1000 genomes]
rs57403425	0.82[EUR][1000 genomes]
rs6827383	0.85[EUR][1000 genomes]
rs6827755	0.85[EUR][1000 genomes]
rs6828270	0.85[EUR][1000 genomes]
rs7658873	0.86[EUR][1000 genomes]
rs7677981	0.87[EUR][1000 genomes]
rs7692439	0.81[EUR][1000 genomes]
rs7696494	0.87[EUR][1000 genomes]
rs9993839	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95261400-95271400	Weak transcription	Dnd41	blood
2	chr4:95268600-95272800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:95269200-95272600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:95269800-95272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:95271000-95272600	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:95271200-95271600	Enhancers	Placenta	Placenta
7	chr4:95271200-95271600	Enhancers	Fetal Thymus	thymus
8	chr4:95271200-95271800	Enhancers	K562	blood
9	chr4:95271200-95272800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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