Variant report

Variant	rs28581732
Chromosome Location	chr4:95258370-95258371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10027578	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10084984	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11947499	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17310498	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17376684	0.82[AMR][1000 genomes]
rs28469826	0.84[AMR][1000 genomes]
rs28508438	0.84[AMR][1000 genomes]
rs28521014	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28568937	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28593606	0.84[AMR][1000 genomes]
rs28650373	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28711614	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28713352	0.84[AMR][1000 genomes]
rs6817118	0.81[AMR][1000 genomes]
rs7685653	0.84[AMR][1000 genomes]
rs9307138	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9884428	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
3	chr4:95254000-95259200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:95254400-95259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:95255200-95258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:95257600-95258400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr4:95257600-95258400	Active TSS	A549	lung
8	chr4:95257600-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:95257800-95258400	Enhancers	GM12878-XiMat	blood
10	chr4:95258200-95258400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:95258200-95258400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:95258200-95260000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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