Variant report

Variant	rs28521014
Chromosome Location	chr4:95236096-95236097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003038	0.83[EUR][1000 genomes]
rs10007463	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10013456	0.83[AFR][1000 genomes]
rs10014718	0.82[EUR][1000 genomes]
rs10016925	0.82[EUR][1000 genomes]
rs10018599	0.83[EUR][1000 genomes]
rs10022350	0.83[EUR][1000 genomes]
rs10025333	0.82[EUR][1000 genomes]
rs10025839	0.82[EUR][1000 genomes]
rs10027578	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10029551	0.83[EUR][1000 genomes]
rs10030605	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10032125	0.82[EUR][1000 genomes]
rs10084984	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516948	0.83[EUR][1000 genomes]
rs11947499	0.93[EUR][1000 genomes]
rs12186176	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17303283	0.82[EUR][1000 genomes]
rs17310498	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28470897	0.82[EUR][1000 genomes]
rs28544271	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28568937	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28581732	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28650373	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41275681	0.85[EUR][1000 genomes]
rs6817118	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6844517	0.83[EUR][1000 genomes]
rs6857003	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7653910	0.85[EUR][1000 genomes]
rs9307138	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9884428	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9992255	0.82[EUR][1000 genomes]
rs9999656	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95235600-95236400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr4:95235800-95238200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:95236000-95236400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr4:95236000-95238200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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