Variant report

Variant	rs10013456
Chromosome Location	chr4:95134692-95134693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94760735..94763109-chr4:95132947..95134725,2	K562	blood:
2	chr4:95133025..95135753-chr4:95158742..95161544,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10003038	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10007463	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10014718	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10016925	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10018599	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10022350	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10022504	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10025333	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10025839	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10027578	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10029551	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10030605	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10032125	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10516948	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12186176	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1509944	0.81[AMR][1000 genomes]
rs17303283	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17310498	0.80[EUR][1000 genomes]
rs17374902	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17374964	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28379069	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28419190	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28442028	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28470897	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28521014	0.83[AFR][1000 genomes]
rs28544271	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28638427	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28676794	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28733161	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28795707	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41275681	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6810424	0.81[AFR][1000 genomes]
rs6811367	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6813439	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6815436	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6817118	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6844517	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848288	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6848742	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6857003	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7653910	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7654621	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7660243	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7661682	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7698171	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7699500	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9307138	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9884428	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9991214	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9992255	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9999328	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9999656	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95129800-95137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95129800-95137200	Weak transcription	Aorta	Aorta
3	chr4:95129800-95139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:95129800-95161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:95130000-95135400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:95130000-95137600	Strong transcription	Fetal Muscle Trunk	muscle
7	chr4:95130000-95141600	Weak transcription	Esophagus	oesophagus
8	chr4:95130000-95148000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:95130200-95135200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr4:95130200-95136200	Weak transcription	Stomach Mucosa	stomach
12	chr4:95130200-95138400	Strong transcription	Fetal Thymus	thymus
13	chr4:95130200-95162600	Weak transcription	Pancreas	Pancrea
14	chr4:95130200-95162600	Weak transcription	Small Intestine	intestine
15	chr4:95130200-95164000	Weak transcription	Spleen	Spleen
16	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
17	chr4:95130200-95194000	Weak transcription	Gastric	stomach
18	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
19	chr4:95130400-95152000	Weak transcription	Brain Angular Gyrus	brain
20	chr4:95130600-95143200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:95130600-95151600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:95131000-95135400	Strong transcription	K562	blood
23	chr4:95131000-95136600	Strong transcription	NHLF	lung
24	chr4:95131000-95138000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:95131000-95138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:95131000-95138600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:95131200-95135800	Strong transcription	Placenta	Placenta
28	chr4:95131200-95136200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:95131200-95138000	Strong transcription	HSMM	muscle
30	chr4:95131200-95138600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:95131200-95143800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:95131400-95135600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:95131400-95136000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:95131400-95136400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:95131400-95136400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:95131400-95137000	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr4:95131400-95138000	Strong transcription	Osteobl	bone
39	chr4:95131400-95142000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:95131400-95143600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:95131400-95143800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr4:95131400-95143800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:95131600-95136200	Strong transcription	Fetal Intestine Large	intestine
44	chr4:95131600-95136800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:95131600-95137800	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr4:95131600-95137800	Strong transcription	Liver	Liver
47	chr4:95131600-95138400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:95131600-95138400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr4:95131600-95143000	Weak transcription	Fetal Heart	heart
50	chr4:95131600-95143800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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