Variant report

Variant	rs6815436
Chromosome Location	chr4:95091032-95091033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95089461..95092214-chr4:95128787..95131060,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163104	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10003038	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10003941	0.81[EUR][1000 genomes]
rs10007463	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10011158	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10013456	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10014718	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10015860	0.81[EUR][1000 genomes]
rs10016925	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10018481	0.81[EUR][1000 genomes]
rs10018599	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10018797	0.84[EUR][1000 genomes]
rs10019728	0.84[EUR][1000 genomes]
rs10022350	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10022504	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10025333	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10025839	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10027578	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10029060	0.84[EUR][1000 genomes]
rs10029551	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10029613	0.81[EUR][1000 genomes]
rs10030605	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10032125	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10516948	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1073590	0.84[EUR][1000 genomes]
rs11936634	0.81[EUR][1000 genomes]
rs11943524	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11943567	0.81[EUR][1000 genomes]
rs12186176	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1509944	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17301787	0.86[AMR][1000 genomes]
rs17301828	0.86[AMR][1000 genomes]
rs17303283	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17310498	0.81[EUR][1000 genomes]
rs17374902	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17374964	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2126831	0.81[EUR][1000 genomes]
rs2126832	0.81[EUR][1000 genomes]
rs2169720	0.81[EUR][1000 genomes]
rs28379069	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28419190	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28442028	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28463840	0.87[EUR][1000 genomes]
rs28470897	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28498973	0.81[EUR][1000 genomes]
rs28544271	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28565382	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28611432	0.86[EUR][1000 genomes]
rs28638427	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28671031	0.83[EUR][1000 genomes]
rs28676794	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28683735	0.82[EUR][1000 genomes]
rs28707595	0.82[EUR][1000 genomes]
rs28718177	0.81[AMR][1000 genomes]
rs28733161	0.83[EUR][1000 genomes]
rs28761031	0.85[EUR][1000 genomes]
rs28767532	0.81[EUR][1000 genomes]
rs28795707	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28832922	0.84[EUR][1000 genomes]
rs28834473	0.81[EUR][1000 genomes]
rs28843992	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28851883	0.85[EUR][1000 genomes]
rs28879383	0.85[EUR][1000 genomes]
rs41275681	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4693370	0.81[EUR][1000 genomes]
rs4693371	0.85[EUR][1000 genomes]
rs4693372	0.84[EUR][1000 genomes]
rs4693373	0.81[EUR][1000 genomes]
rs5025474	0.81[EUR][1000 genomes]
rs56110205	0.84[EUR][1000 genomes]
rs6532466	0.81[EUR][1000 genomes]
rs6810424	0.83[AMR][1000 genomes]
rs6811367	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6813439	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6817118	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6834248	0.84[EUR][1000 genomes]
rs6844517	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6848288	0.91[EUR][1000 genomes]
rs6848742	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6857003	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7653910	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7654621	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7660243	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7661682	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7693022	0.81[EUR][1000 genomes]
rs7698171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7699500	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9307138	0.87[EUR][1000 genomes]
rs9884263	0.81[AMR][1000 genomes]
rs9884428	0.83[EUR][1000 genomes]
rs9991214	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9991386	0.81[EUR][1000 genomes]
rs9992255	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9992640	0.84[EUR][1000 genomes]
rs9993715	0.81[EUR][1000 genomes]
rs9996908	0.81[EUR][1000 genomes]
rs9999328	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9999656	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv966205	chr4:95090307-95094146	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95089800-95099600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:95090200-95094800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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