Variant report

Variant	rs28568937
Chromosome Location	chr4:95236247-95236248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10003038	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10007463	0.83[EUR][1000 genomes]
rs10014718	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10016925	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10018599	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10022350	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10022504	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10025333	0.83[EUR][1000 genomes]
rs10025839	0.83[EUR][1000 genomes]
rs10027578	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10029551	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10030605	0.84[EUR][1000 genomes]
rs10032125	0.83[EUR][1000 genomes]
rs10084984	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10516948	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11947499	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12186176	0.83[EUR][1000 genomes]
rs17303283	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17310498	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17374902	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17374964	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28379069	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28419190	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28442028	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28470897	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28521014	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28581732	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28593606	0.80[EUR][1000 genomes]
rs28638427	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28650373	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28795707	0.81[EUR][1000 genomes]
rs41275681	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6811367	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6817118	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6844517	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6848742	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6857003	0.81[EUR][1000 genomes]
rs7653910	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7654621	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7660243	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7661682	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7685653	0.80[EUR][1000 genomes]
rs9307138	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9884428	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9991214	0.81[EUR][1000 genomes]
rs9992255	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9999328	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9999656	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95235600-95236400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr4:95235800-95238200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:95236000-95236400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr4:95236000-95238200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr4:95236200-95237400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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