Variant report

Variant	rs36190715
Chromosome Location	chr9:108327913-108327914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11936526	1.00[ASN][1000 genomes]
rs11938688	1.00[ASN][1000 genomes]
rs11940271	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947921	1.00[ASN][1000 genomes]
rs17021533	1.00[ASN][1000 genomes]
rs17376684	1.00[ASN][1000 genomes]
rs28508438	1.00[ASN][1000 genomes]
rs28713352	1.00[ASN][1000 genomes]
rs34124298	1.00[EUR][1000 genomes]
rs57024887	1.00[ASN][1000 genomes]
rs72888692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049133	chr9:108292302-108356068	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108321200-108335600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:108321600-108336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:108321600-108336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:108321600-108336800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:108321600-108338000	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:108321600-108353600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:108321600-108354000	Weak transcription	Right Ventricle	heart
8	chr9:108321600-108360200	Weak transcription	HSMM	muscle
9	chr9:108321600-108397200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:108322200-108334600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:108324600-108334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:108324800-108353800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:108325400-108334600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:108325400-108335000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:108325400-108337800	Weak transcription	Dnd41	blood
16	chr9:108325400-108339200	Weak transcription	Fetal Brain Male	brain
17	chr9:108325400-108357200	Weak transcription	A549	lung
18	chr9:108325600-108336600	Weak transcription	Fetal Lung	lung
19	chr9:108325600-108353200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:108325600-108353200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:108325600-108353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:108325800-108353800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:108326000-108334000	Weak transcription	Left Ventricle	heart
24	chr9:108326000-108334600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:108326000-108338200	Weak transcription	Ovary	ovary

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