Variant report

Variant	rs2841108
Chromosome Location	chr1:154013220-154013221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10127484	1.00[CHB][hapmap]
rs10797061	0.82[CHB][hapmap]
rs10908578	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap]
rs10908751	0.82[CHB][hapmap]
rs11264573	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap]
rs11264736	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.81[YRI][hapmap]
rs11264972	1.00[JPT][hapmap]
rs12142733	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.81[YRI][hapmap]
rs1591902	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1832582	1.00[JPT][hapmap]
rs2252508	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap];0.81[YRI][hapmap]
rs2790686	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap]
rs2790690	0.81[YRI][hapmap]
rs2841102	0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs2841103	0.82[AMR][1000 genomes]
rs2841104	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3001365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4072431	0.82[CHB][hapmap]
rs4364874	0.82[CHB][hapmap]
rs4393149	0.82[CHB][hapmap]
rs4845360	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[ASN][1000 genomes]
rs4845364	0.81[MEX][hapmap]
rs4845610	0.82[CHB][hapmap]
rs6661009	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.86[MEX][hapmap]
rs7414227	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap];0.81[YRI][hapmap]
rs7521047	0.95[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes]
rs7522030	1.00[CHD][hapmap];0.80[GIH][hapmap]
rs7537213	0.95[GIH][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes]
rs9427318	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9803862	0.82[CHB][hapmap]
rs9804045	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
5	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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