Variant report

Variant	rs10127484
Chromosome Location	chr1:153900980-153900981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153884633..153886577-chr1:153898613..153901128,2	MCF-7	breast:
2	chr1:153900356..153902877-chr1:153903636..153905332,2	K562	blood:
3	chr1:153794811..153797634-chr1:153899769..153901924,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198837	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10494303	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10908512	0.81[EUR][1000 genomes]
rs10908525	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908526	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908578	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264736	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11800001	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12117078	1.00[JPT][hapmap]
rs12133492	0.85[EUR][1000 genomes]
rs12142639	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12142733	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591902	1.00[CHB][hapmap]
rs17364880	1.00[JPT][hapmap]
rs2252508	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2790686	1.00[CHB][hapmap]
rs2841108	1.00[CHB][hapmap]
rs3001365	1.00[CHB][hapmap]
rs35711150	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3791186	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs4276953	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4540690	0.81[EUR][1000 genomes]
rs4845360	1.00[CHB][hapmap]
rs4845586	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6661009	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6671362	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7414227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7415004	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7522030	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7549032	0.93[EUR][1000 genomes]
rs7554469	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
6	nsv872450	chr1:153889042-153937513	Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153896400-153901400	Weak transcription	Left Ventricle	heart
2	chr1:153896400-153901400	Weak transcription	Lung	lung
3	chr1:153896400-153902400	Weak transcription	Ovary	ovary
4	chr1:153896400-153902600	Weak transcription	Esophagus	oesophagus
5	chr1:153896400-153903200	Weak transcription	Psoas Muscle	Psoas
6	chr1:153896600-153901400	Weak transcription	Fetal Intestine Large	intestine
7	chr1:153896600-153901600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:153896600-153901800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:153896600-153902400	Weak transcription	Right Ventricle	heart
10	chr1:153896600-153902600	Weak transcription	Aorta	Aorta
11	chr1:153896600-153903400	Weak transcription	Colonic Mucosa	Colon
12	chr1:153896600-153906400	Weak transcription	Small Intestine	intestine
13	chr1:153896600-153906400	Weak transcription	NH-A	brain
14	chr1:153896600-153908200	Weak transcription	Stomach Mucosa	stomach
15	chr1:153896600-153908200	Weak transcription	HSMM	muscle
16	chr1:153896800-153901000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:153896800-153901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:153896800-153901000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:153896800-153901000	Weak transcription	Right Atrium	heart
20	chr1:153896800-153901000	Weak transcription	NHLF	lung
21	chr1:153896800-153901200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr1:153896800-153901200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:153896800-153901200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:153896800-153901400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:153896800-153901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:153896800-153901400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:153896800-153901400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:153896800-153901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:153896800-153901400	Weak transcription	Brain Germinal Matrix	brain
30	chr1:153896800-153901400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:153896800-153901400	Weak transcription	Fetal Intestine Small	intestine
32	chr1:153896800-153901400	Weak transcription	Fetal Stomach	stomach
33	chr1:153896800-153901400	Weak transcription	Gastric	stomach
34	chr1:153896800-153901400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr1:153896800-153901400	Weak transcription	Spleen	Spleen
36	chr1:153896800-153901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr1:153896800-153901600	Weak transcription	Fetal Brain Female	brain
38	chr1:153896800-153901600	Weak transcription	Fetal Muscle Leg	muscle
39	chr1:153896800-153901600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr1:153896800-153901600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr1:153896800-153901600	Weak transcription	A549	lung
42	chr1:153896800-153901800	Weak transcription	Liver	Liver
43	chr1:153896800-153902000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:153896800-153902000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr1:153896800-153902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:153896800-153902200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:153896800-153902400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:153896800-153902400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:153896800-153902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:153896800-153902400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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