Variant report

Variant	rs35711150
Chromosome Location	chr1:153859335-153859336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153858733..153861625-chr1:153893307..153895024,2	K562	blood:
2	chr1:153858652..153861331-chr1:153892093..153894371,2	MCF-7	breast:
3	chr1:153857419..153860844-chr1:153877068..153879565,3	K562	blood:
4	chr1:153850041..153853026-chr1:153858590..153860683,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10127484	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10908512	0.88[EUR][1000 genomes]
rs10908525	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10908526	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264573	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264621	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264736	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1139620	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11800001	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120118	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12124424	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12130611	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12133492	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12142639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142733	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738361	0.86[ASN][1000 genomes]
rs2252508	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4276953	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4341393	0.86[ASN][1000 genomes]
rs4370789	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4451582	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4540690	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4581307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4596938	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61803655	0.86[ASN][1000 genomes]
rs6427300	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6427306	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6661009	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6668066	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6671362	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6677794	0.81[EUR][1000 genomes]
rs72694233	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7414227	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7415004	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7522030	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7549032	0.86[EUR][1000 genomes]
rs7554469	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9426935	0.86[ASN][1000 genomes]
rs9426938	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9427232	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9427233	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv817392	chr1:153724807-153870005	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153825800-153887200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:153830200-153863600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:153837000-153893000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:153842400-153859400	Weak transcription	Hela-S3	cervix
5	chr1:153842600-153862400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:153842800-153862800	Weak transcription	Thymus	Thymus
7	chr1:153846200-153894200	Weak transcription	Esophagus	oesophagus
8	chr1:153846400-153871600	Weak transcription	Lung	lung
9	chr1:153853800-153864800	Weak transcription	Primary B cells from cord blood	blood
10	chr1:153853800-153892200	Weak transcription	Pancreas	Pancrea
11	chr1:153853800-153893400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:153854000-153859800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:153854000-153869200	Weak transcription	HepG2	liver
14	chr1:153854000-153892600	Weak transcription	Colonic Mucosa	Colon
15	chr1:153854200-153859400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:153854400-153876200	Weak transcription	Spleen	Spleen
17	chr1:153854400-153892400	Weak transcription	Aorta	Aorta
18	chr1:153854600-153859400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:153854600-153859800	Weak transcription	Placenta	Placenta
20	chr1:153854600-153865200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:153854600-153892200	Weak transcription	HSMM	muscle
22	chr1:153854800-153871200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:153855000-153859400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:153855000-153861600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:153855000-153866200	Weak transcription	Left Ventricle	heart
26	chr1:153855000-153886800	Weak transcription	Gastric	stomach
27	chr1:153855000-153886800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:153855000-153887200	Weak transcription	Ovary	ovary
29	chr1:153855000-153891800	Weak transcription	NHEK	skin
30	chr1:153855000-153892400	Weak transcription	NHLF	lung
31	chr1:153855000-153892800	Weak transcription	NH-A	brain
32	chr1:153855200-153860000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:153855200-153860000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:153855200-153860200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:153855200-153860800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr1:153855200-153862400	Weak transcription	Fetal Muscle Leg	muscle
37	chr1:153855200-153865200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:153855200-153865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:153855200-153871200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:153855200-153871200	Weak transcription	Fetal Brain Female	brain
41	chr1:153855200-153880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:153855400-153859600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:153855400-153859800	Weak transcription	A549	lung
44	chr1:153855400-153860800	Weak transcription	Fetal Lung	lung
45	chr1:153855400-153861000	Weak transcription	NHDF-Ad	bronchial
46	chr1:153855400-153861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:153855400-153865200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:153855400-153870400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:153855400-153871200	Weak transcription	Fetal Intestine Large	intestine
50	chr1:153855400-153876400	Weak transcription	Osteobl	bone

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