Variant report

Variant	rs28412726
Chromosome Location	chr9:97457506-97457507
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97457022..97459092-chr9:97482059..97483636,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10120534	1.00[AFR][1000 genomes]
rs10121232	0.95[AFR][1000 genomes]
rs10121460	1.00[AFR][1000 genomes]
rs10121468	0.91[AFR][1000 genomes]
rs10123136	0.95[AFR][1000 genomes]
rs28634854	1.00[AFR][1000 genomes]
rs62580295	1.00[ASN][1000 genomes]
rs7022423	1.00[AFR][1000 genomes]
rs7033300	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97454600-97457800	Enhancers	Brain Germinal Matrix	brain
2	chr9:97455000-97457600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:97455200-97460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:97455200-97460400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:97455800-97460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:97456200-97462200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:97456200-97463200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:97456800-97460200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:97457000-97460200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:97457200-97460200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:97457200-97460200	Weak transcription	Fetal Kidney	kidney
12	chr9:97457200-97460400	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:97457400-97458600	Weak transcription	Fetal Heart	heart
14	chr9:97457400-97458600	Weak transcription	Fetal Lung	lung
15	chr9:97457400-97459000	Weak transcription	Fetal Intestine Small	intestine
16	chr9:97457400-97459200	Weak transcription	Fetal Brain Male	brain
17	chr9:97457400-97459600	Weak transcription	HepG2	liver
18	chr9:97457400-97460200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:97457400-97460400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:97457400-97460400	Weak transcription	Gastric	stomach
21	chr9:97457400-97460400	Weak transcription	Pancreas	Pancrea
22	chr9:97457400-97460600	Weak transcription	Fetal Intestine Large	intestine
23	chr9:97457400-97465800	Weak transcription	Fetal Stomach	stomach

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