Variant report

Variant	rs10123136
Chromosome Location	chr9:97466587-97466588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10121232	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10121460	0.95[AFR][1000 genomes]
rs10121468	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28412726	0.95[AFR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7033300	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3502975	chr9:97461331-97466629	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97463600-97467200	Weak transcription	Placenta	Placenta
2	chr9:97465400-97466600	Enhancers	Fetal Intestine Large	intestine
3	chr9:97465400-97466600	Enhancers	Fetal Intestine Small	intestine
4	chr9:97465600-97466600	Enhancers	Liver	Liver
5	chr9:97465800-97466600	Flanking Active TSS	HepG2	liver
6	chr9:97465800-97469600	Enhancers	Fetal Lung	lung
7	chr9:97465800-97469600	Enhancers	Fetal Stomach	stomach
8	chr9:97466000-97467400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:97466000-97468400	Weak transcription	Small Intestine	intestine
10	chr9:97466400-97467200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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