Variant report

Variant	rs7018945
Chromosome Location	chr9:97459812-97459813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97459238..97460937-chr9:97893388..97895358,2	MCF-7	breast:
2	chr9:97459537..97462925-chr9:97464708..97468853,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993307	0.91[AFR][1000 genomes]
rs10993308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12115845	0.88[AFR][1000 genomes]
rs12335651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12339300	0.88[AFR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7032765	0.88[AFR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97455200-97460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:97455200-97460400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:97455800-97460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:97456200-97462200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:97456200-97463200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:97456800-97460200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:97457000-97460200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:97457200-97460200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:97457200-97460200	Weak transcription	Fetal Kidney	kidney
10	chr9:97457200-97460400	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:97457400-97460200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:97457400-97460400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:97457400-97460400	Weak transcription	Gastric	stomach
14	chr9:97457400-97460400	Weak transcription	Pancreas	Pancrea
15	chr9:97457400-97460600	Weak transcription	Fetal Intestine Large	intestine
16	chr9:97457400-97465800	Weak transcription	Fetal Stomach	stomach
17	chr9:97458400-97460600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:97459000-97460200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:97459000-97460800	Enhancers	Fetal Intestine Small	intestine
20	chr9:97459000-97461200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:97459400-97461600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:97459600-97460400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:97459600-97460600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:97459600-97460600	Weak transcription	Fetal Lung	lung
25	chr9:97459600-97461200	Enhancers	HepG2	liver
26	chr9:97459800-97460000	Enhancers	Fetal Brain Male	brain

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