Variant report

Variant	rs10125337
Chromosome Location	chr9:97444038-97444039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97441827..97444404-chr9:97892662..97894704,2	MCF-7	breast:
2	chr9:97442634..97444916-chr9:97682011..97684756,3	MCF-7	breast:
3	chr9:97443408..97444334-chr9:97889590..97890646,8	MCF-7	breast:
4	chr9:97443407..97445106-chr9:97754287..97756345,2	MCF-7	breast:
5	chr9:97443321..97444335-chr9:97877995..97879538,5	MCF-7	breast:
6	chr9:97443304..97445720-chr9:97866008..97868131,2	MCF-7	breast:
7	chr9:97443329..97444394-chr9:97893249..97894271,3	MCF-7	breast:
8	chr9:97443575..97445900-chr9:97751534..97753701,2	MCF-7	breast:
9	chr9:97443387..97444120-chr9:97886736..97887568,2	MCF-7	breast:
10	chr9:97443377..97444218-chr9:97888970..97890354,6	MCF-7	breast:
11	chr9:97443804..97444534-chr9:97893426..97894190,2	MCF-7	breast:
12	chr9:97443800..97444397-chr9:97545040..97545615,2	K562	blood:
13	chr9:97443476..97444352-chr9:97544818..97545780,2	MCF-7	breast:
14	chr9:97443457..97444352-chr9:97889625..97890490,6	K562	blood:
15	chr9:97443655..97445355-chr9:97879259..97881935,2	MCF-7	breast:
16	chr9:97443362..97445531-chr9:97792308..97793975,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081722	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10114789	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115113	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
2	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:97442400-97444200	Enhancers	Aorta	Aorta
4	chr9:97442400-97444600	Enhancers	Fetal Stomach	stomach
5	chr9:97443600-97444200	Enhancers	Fetal Muscle Leg	muscle
6	chr9:97443600-97444400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr9:97443600-97444600	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:97443600-97444600	Enhancers	Brain Hippocampus Middle	brain
9	chr9:97443600-97444600	Enhancers	HSMM	muscle
10	chr9:97443800-97444200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:97443800-97444200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr9:97443800-97444200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:97443800-97444200	Enhancers	Fetal Intestine Large	intestine
14	chr9:97443800-97444200	Flanking Active TSS	HepG2	liver
15	chr9:97443800-97444400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:97443800-97444400	Enhancers	NHDF-Ad	bronchial
17	chr9:97444000-97444200	Enhancers	Primary B cells from peripheral blood	blood
18	chr9:97444000-97444200	Enhancers	Brain Angular Gyrus	brain
19	chr9:97444000-97444200	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:97444000-97444200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:97444000-97444400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:97444000-97444400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:97444000-97444400	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:97444000-97444400	Flanking Active TSS	A549	lung
25	chr9:97444000-97444400	Flanking Active TSS	HSMMtube	muscle
26	chr9:97444000-97444400	Enhancers	Osteobl	bone
27	chr9:97444000-97444600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr9:97444000-97444800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:97444000-97445400	Enhancers	Brain Substantia Nigra	brain

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