Variant report

Variant	rs10993308
Chromosome Location	chr9:97452241-97452242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10125337	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs10993307	0.96[AFR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12115845	0.93[AFR][1000 genomes]
rs12335651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12339300	0.93[AFR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7032765	0.93[AFR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97449200-97456200	Weak transcription	Fetal Intestine Large	intestine
2	chr9:97449800-97454200	Weak transcription	A549	lung
3	chr9:97450000-97452800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:97451600-97454400	Weak transcription	HepG2	liver

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