Variant report

Variant	rs12344661
Chromosome Location	chr9:97436931-97436932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10117956	0.94[AFR][1000 genomes]
rs10119797	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10124091	0.95[AFR][1000 genomes]
rs10124217	0.94[AFR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12346245	0.93[AFR][1000 genomes]
rs12347853	0.90[AFR][1000 genomes]
rs12350284	0.80[AFR][1000 genomes]
rs13295608	0.95[AFR][1000 genomes]
rs16911594	0.94[AFR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs67161795	0.94[AFR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]
rs7871632	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97431600-97437200	Weak transcription	Fetal Kidney	kidney
2	chr9:97431800-97437000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:97431800-97441000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:97432000-97438600	Weak transcription	Ovary	ovary
5	chr9:97432200-97437800	Weak transcription	Fetal Intestine Small	intestine
6	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
7	chr9:97432400-97437000	Weak transcription	HepG2	liver
8	chr9:97434400-97439000	Enhancers	NHDF-Ad	bronchial
9	chr9:97434800-97438800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:97435000-97438000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:97435000-97438800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:97435200-97439000	Enhancers	HSMM	muscle
13	chr9:97435600-97437200	Weak transcription	A549	lung
14	chr9:97435800-97437000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:97436000-97437000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:97436000-97437000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:97436000-97437000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:97436000-97437000	Weak transcription	NHLF	lung
19	chr9:97436000-97437200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:97436000-97437200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:97436000-97437200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:97436000-97437200	Weak transcription	NH-A	brain
23	chr9:97436000-97437400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:97436200-97437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:97436200-97437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:97436600-97437000	Weak transcription	Hela-S3	cervix
27	chr9:97436600-97438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:97436800-97437000	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:97436800-97438000	Enhancers	HMEC	breast
30	chr9:97436800-97438200	Enhancers	NHEK	skin
31	chr9:97436800-97439000	Enhancers	HSMMtube	muscle
32	chr9:97436800-97439000	Enhancers	Osteobl	bone
33	chr9:97436800-97440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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