Variant report

Variant	rs28833170
Chromosome Location	chr9:97433288-97433289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97432815..97434625-chr9:97564258..97567055,2	MCF-7	breast:
2	chr9:97431591..97434425-chr9:97442204..97443776,2	MCF-7	breast:
3	chr9:97392176..97395070-chr9:97431603..97433493,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7030255	1.00[AMR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97429400-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97431600-97434800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:97431600-97436800	Weak transcription	HSMMtube	muscle
4	chr9:97431600-97437200	Weak transcription	Fetal Kidney	kidney
5	chr9:97431800-97434400	Weak transcription	NHDF-Ad	bronchial
6	chr9:97431800-97434800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:97431800-97435000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:97431800-97435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:97431800-97435000	Weak transcription	NH-A	brain
10	chr9:97431800-97435000	Weak transcription	NHLF	lung
11	chr9:97431800-97435200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:97431800-97435200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:97431800-97435200	Weak transcription	HSMM	muscle
14	chr9:97431800-97435200	Weak transcription	HUVEC	blood vessel
15	chr9:97431800-97435600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:97431800-97435600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:97431800-97437000	Weak transcription	Adipose Nuclei	Adipose
18	chr9:97431800-97441000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:97432000-97435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:97432000-97435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:97432000-97435000	Weak transcription	HMEC	breast
22	chr9:97432000-97435000	Weak transcription	NHEK	skin
23	chr9:97432000-97435000	Weak transcription	Osteobl	bone
24	chr9:97432000-97438600	Weak transcription	Ovary	ovary
25	chr9:97432200-97437800	Weak transcription	Fetal Intestine Small	intestine
26	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
27	chr9:97432400-97437000	Weak transcription	HepG2	liver
28	chr9:97432600-97435000	Weak transcription	A549	lung
29	chr9:97432800-97435000	Weak transcription	Hela-S3	cervix

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