Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97444988..97448492-chr9:97460708..97463598,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081722	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10114789	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10125337	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
2	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:97444200-97447800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:97444200-97448600	Weak transcription	Fetal Intestine Large	intestine
5	chr9:97444400-97447800	Weak transcription	NHDF-Ad	bronchial
6	chr9:97444400-97448000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:97444400-97448200	Weak transcription	Osteobl	bone
8	chr9:97444400-97448400	Weak transcription	HepG2	liver
9	chr9:97444600-97448400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:97444800-97448600	Weak transcription	A549	lung
11	chr9:97445400-97448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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