Variant report

Variant	rs7036063
Chromosome Location	chr9:97464268-97464269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993307	0.91[AFR][1000 genomes]
rs10993308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12115845	0.88[AFR][1000 genomes]
rs12335651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12339300	0.88[AFR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28369680	1.00[EUR][1000 genomes]
rs28552494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7032765	0.88[AFR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3502975	chr9:97461331-97466629	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3502973	chr9:97461395-97465947	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3405746	chr9:97461831-97466479	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3483152	chr9:97462401-97465687	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3483153	chr9:97462402-97465659	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3349687	chr9:97462414-97465642	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3502978	chr9:97462432-97465622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3502976	chr9:97462449-97465560	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3502977	chr9:97462482-97465561	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3502972	chr9:97462525-97465513	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3483154	chr9:97462532-97465506	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3502979	chr9:97462532-97465506	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv10242	chr9:97462576-97464526	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv517074	chr9:97463435-97464381	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97457400-97465800	Weak transcription	Fetal Stomach	stomach
2	chr9:97460800-97465400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97461000-97465400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:97461000-97465800	Weak transcription	Fetal Lung	lung
5	chr9:97461200-97465400	Weak transcription	HepG2	liver
6	chr9:97461200-97465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:97463600-97467200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links