Variant report

Variant	rs28369680
Chromosome Location	chr9:97385751-97385752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97375061..97375860-chr9:97384899..97385874,3	MCF-7	breast:
2	chr9:97377917..97381579-chr9:97382484..97386312,5	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081722	1.00[EUR][1000 genomes]
rs10114789	1.00[EUR][1000 genomes]
rs10114975	1.00[EUR][1000 genomes]
rs10115113	1.00[EUR][1000 genomes]
rs10115614	1.00[EUR][1000 genomes]
rs10116221	1.00[EUR][1000 genomes]
rs10119797	1.00[EUR][1000 genomes]
rs10120534	1.00[EUR][1000 genomes]
rs10121232	1.00[EUR][1000 genomes]
rs10121468	1.00[EUR][1000 genomes]
rs10123136	1.00[EUR][1000 genomes]
rs10123264	1.00[EUR][1000 genomes]
rs10124037	1.00[EUR][1000 genomes]
rs10125337	1.00[EUR][1000 genomes]
rs10993308	1.00[EUR][1000 genomes]
rs10993321	1.00[EUR][1000 genomes]
rs12335651	1.00[EUR][1000 genomes]
rs12337079	1.00[EUR][1000 genomes]
rs12344661	1.00[EUR][1000 genomes]
rs28552494	1.00[EUR][1000 genomes]
rs28634854	1.00[EUR][1000 genomes]
rs28716590	1.00[EUR][1000 genomes]
rs28833170	1.00[EUR][1000 genomes]
rs58782985	1.00[EUR][1000 genomes]
rs6479567	1.00[EUR][1000 genomes]
rs7018945	1.00[EUR][1000 genomes]
rs7022423	1.00[EUR][1000 genomes]
rs7033300	1.00[EUR][1000 genomes]
rs7036063	1.00[EUR][1000 genomes]
rs7041122	1.00[EUR][1000 genomes]
rs7046521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97374600-97392600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97376200-97385800	Strong transcription	Liver	Liver
5	chr9:97381400-97389800	Weak transcription	Pancreas	Pancrea
6	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
8	chr9:97382600-97392800	Weak transcription	Lung	lung
9	chr9:97382600-97393000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:97382800-97387000	Weak transcription	Fetal Intestine Large	intestine
11	chr9:97382800-97387600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:97382800-97388200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:97382800-97399400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:97383800-97390200	Strong transcription	Fetal Intestine Small	intestine
15	chr9:97384000-97386000	Enhancers	Fetal Muscle Leg	muscle
16	chr9:97384200-97385800	Enhancers	Fetal Lung	lung
17	chr9:97384200-97386000	Enhancers	Fetal Muscle Trunk	muscle
18	chr9:97384400-97387200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97384800-97387600	Weak transcription	Gastric	stomach
20	chr9:97385000-97388200	Weak transcription	Fetal Thymus	thymus
21	chr9:97385200-97387200	Weak transcription	Fetal Stomach	stomach
22	chr9:97385400-97386600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:97385600-97385800	Enhancers	HepG2	liver
24	chr9:97385600-97386000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:97385600-97386200	Enhancers	Stomach Mucosa	stomach

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