Variant report

Variant	rs28414068
Chromosome Location	chr3:179675734-179675735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59305223	1.00[AMR][1000 genomes]
rs59944664	1.00[AMR][1000 genomes]
rs73883452	1.00[AMR][1000 genomes]
rs73885965	0.87[AFR][1000 genomes]
rs9856651	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
2	chr3:179671800-179676400	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:179672200-179676000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:179672200-179679600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:179673600-179675800	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:179674200-179675800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:179674200-179676400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:179674400-179676200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:179674400-179676200	Enhancers	Brain Substantia Nigra	brain
10	chr3:179674400-179676400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:179674400-179676600	Enhancers	Brain Angular Gyrus	brain
12	chr3:179674600-179675800	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:179674600-179677400	Flanking Active TSS	Dnd41	blood
14	chr3:179674800-179676200	Enhancers	Thymus	Thymus
15	chr3:179674800-179676600	Enhancers	Brain Hippocampus Middle	brain
16	chr3:179675000-179675800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:179675200-179675800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:179675200-179675800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:179675200-179679800	Enhancers	Fetal Thymus	thymus
20	chr3:179675400-179675800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:179675600-179676200	Enhancers	Adipose Nuclei	Adipose

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