Variant report

Variant	rs73885965
Chromosome Location	chr3:179620032-179620033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16830913	1.00[AMR][1000 genomes]
rs28414068	0.87[AFR][1000 genomes]
rs28625480	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885964	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850985	1.00[AMR][1000 genomes]
rs9852280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9856651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179601200-179624200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:179606000-179626600	Weak transcription	Dnd41	blood
3	chr3:179606200-179628800	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:179610800-179622800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:179611000-179623400	Weak transcription	Brain Angular Gyrus	brain
6	chr3:179617600-179620200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:179619800-179620200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:179620000-179620200	Enhancers	Colonic Mucosa	Colon
9	chr3:179620000-179620200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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