Variant report

Variant	rs9850985
Chromosome Location	chr3:179655760-179655761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16830913	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625480	1.00[AMR][1000 genomes]
rs73885964	1.00[AMR][1000 genomes]
rs73885965	1.00[AMR][1000 genomes]
rs9852280	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9856651	1.00[AMR][1000 genomes]
rs9857206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3337930	chr3:179652358-179656756	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3326474	chr3:179653283-179656131	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3391315	chr3:179653633-179655806	Weak transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3507089	chr3:179654055-179655856	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9850985	NLRP4	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
2	chr3:179648400-179660000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:179652000-179660200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:179653000-179659200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:179653600-179660400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:179654000-179659800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:179655200-179655800	ZNF genes & repeats	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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