Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179642555..179645418-chr3:179645874..179647409,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1073072	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13318546	1.00[EUR][1000 genomes]
rs13320487	1.00[EUR][1000 genomes]
rs13322260	1.00[EUR][1000 genomes]
rs28498062	1.00[EUR][1000 genomes]
rs28625480	1.00[AMR][1000 genomes]
rs6773556	1.00[EUR][1000 genomes]
rs73058618	1.00[EUR][1000 genomes]
rs73058619	1.00[EUR][1000 genomes]
rs73058627	1.00[EUR][1000 genomes]
rs73059371	1.00[EUR][1000 genomes]
rs73061326	1.00[EUR][1000 genomes]
rs73061341	1.00[EUR][1000 genomes]
rs73061342	1.00[EUR][1000 genomes]
rs73885964	1.00[AMR][1000 genomes]
rs73885965	1.00[AMR][1000 genomes]
rs9811751	1.00[CEU][hapmap]
rs9816040	1.00[CEU][hapmap]
rs9822666	1.00[EUR][1000 genomes]
rs9828846	1.00[EUR][1000 genomes]
rs9832389	1.00[CEU][hapmap]
rs9837309	1.00[EUR][1000 genomes]
rs9843845	1.00[EUR][1000 genomes]
rs9847180	1.00[CEU][hapmap]
rs9848356	1.00[EUR][1000 genomes]
rs9848494	1.00[EUR][1000 genomes]
rs9850496	1.00[CEU][hapmap]
rs9850985	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9852280	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs9855039	1.00[EUR][1000 genomes]
rs9856651	1.00[AMR][1000 genomes]
rs9857206	1.00[AMR][1000 genomes]
rs9870014	1.00[EUR][1000 genomes]
rs9872192	1.00[CEU][hapmap]
rs9879437	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179639400-179644000	Weak transcription	Pancreas	Pancrea
2	chr3:179639600-179646200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:179640000-179643800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:179640000-179647600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:179640200-179643800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:179640200-179644000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:179640200-179644200	Weak transcription	Dnd41	blood
8	chr3:179642200-179646200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:179642400-179646000	Weak transcription	Thymus	Thymus
10	chr3:179642400-179646400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:179642400-179651000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:179642600-179644000	Weak transcription	Brain Inferior Temporal Lobe	brain

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