Variant report

Variant	rs9852280
Chromosome Location	chr3:179650813-179650814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16830913	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs28625480	1.00[AMR][1000 genomes]
rs73885964	1.00[AMR][1000 genomes]
rs73885965	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850985	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9856651	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179642400-179651000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:179644200-179652000	Enhancers	Dnd41	blood
3	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
4	chr3:179648400-179660000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:179648600-179651600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:179648800-179651000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:179649200-179651000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:179650200-179651800	Enhancers	Fetal Brain Male	brain
9	chr3:179650600-179651200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:179650600-179653000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:179650600-179653600	Enhancers	Brain Substantia Nigra	brain
12	chr3:179650800-179652000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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