Variant report

Variant	rs73885964
Chromosome Location	chr3:179598581-179598582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16830913	1.00[AMR][1000 genomes]
rs28625480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885965	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850985	1.00[AMR][1000 genomes]
rs9852280	1.00[AMR][1000 genomes]
rs9856651	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179564200-179606000	Strong transcription	Dnd41	blood
4	chr3:179580200-179598600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:179590600-179598800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:179591000-179600400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:179595800-179605800	Weak transcription	Pancreas	Pancrea
8	chr3:179597400-179598800	Weak transcription	Brain Substantia Nigra	brain
9	chr3:179597600-179599000	Weak transcription	Brain Angular Gyrus	brain
10	chr3:179597800-179599800	Weak transcription	Fetal Brain Female	brain
11	chr3:179598000-179598600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:179598200-179598600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:179598200-179598800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:179598200-179599800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:179598200-179600600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:179598400-179600600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:179598400-179601000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr3:179598400-179601200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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