Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179592387..179595093-chr3:179595516..179598164,2	K562	blood:

Variant related genes	Relation type
ENSG00000243799	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10049363	0.81[YRI][hapmap]
rs12171276	0.82[LWK][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs13320487	1.00[EUR][1000 genomes]
rs13325663	0.81[YRI][hapmap]
rs16830913	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28498062	1.00[EUR][1000 genomes]
rs73058618	1.00[EUR][1000 genomes]
rs73058619	1.00[EUR][1000 genomes]
rs73058627	1.00[EUR][1000 genomes]
rs73059371	1.00[EUR][1000 genomes]
rs73061326	1.00[EUR][1000 genomes]
rs9811751	1.00[CEU][hapmap]
rs9816040	1.00[CEU][hapmap]
rs9822666	1.00[EUR][1000 genomes]
rs9828846	1.00[EUR][1000 genomes]
rs9832389	1.00[CEU][hapmap]
rs9842121	1.00[AMR][1000 genomes]
rs9842990	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs9843845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847180	1.00[CEU][hapmap]
rs9848356	1.00[EUR][1000 genomes]
rs9848494	1.00[EUR][1000 genomes]
rs9850496	1.00[CEU][hapmap]
rs9855039	1.00[EUR][1000 genomes]
rs9872192	1.00[CEU][hapmap]
rs9879437	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179564200-179606000	Strong transcription	Dnd41	blood
4	chr3:179580200-179598600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:179590600-179598800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:179591000-179600400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:179595800-179605800	Weak transcription	Pancreas	Pancrea
8	chr3:179596800-179597400	Strong transcription	Brain Substantia Nigra	brain
9	chr3:179596800-179597600	Strong transcription	Brain Angular Gyrus	brain
10	chr3:179596800-179598200	Strong transcription	Brain Hippocampus Middle	brain

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