Variant report

Variant	rs9848494
Chromosome Location	chr3:179725181-179725182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1073072	1.00[EUR][1000 genomes]
rs13318546	1.00[EUR][1000 genomes]
rs13320487	1.00[EUR][1000 genomes]
rs13322260	1.00[EUR][1000 genomes]
rs16830913	1.00[EUR][1000 genomes]
rs28498062	1.00[EUR][1000 genomes]
rs6773556	1.00[EUR][1000 genomes]
rs6800787	0.83[AFR][1000 genomes]
rs73058618	1.00[EUR][1000 genomes]
rs73058619	1.00[EUR][1000 genomes]
rs73058627	1.00[EUR][1000 genomes]
rs73059371	1.00[EUR][1000 genomes]
rs73061326	1.00[EUR][1000 genomes]
rs73061341	1.00[EUR][1000 genomes]
rs73061342	1.00[EUR][1000 genomes]
rs9820069	0.83[AFR][1000 genomes]
rs9822666	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9828846	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9837309	1.00[EUR][1000 genomes]
rs9843845	1.00[EUR][1000 genomes]
rs9848356	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9855039	1.00[EUR][1000 genomes]
rs9870014	1.00[EUR][1000 genomes]
rs9879097	0.83[AFR][1000 genomes]
rs9879437	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179703800-179725200	Weak transcription	Dnd41	blood
2	chr3:179710400-179725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:179721000-179725200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:179721000-179725400	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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