Variant report

Variant	rs6800787
Chromosome Location	chr3:179741450-179741451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs6764921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73059383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73059392	1.00[EUR][1000 genomes]
rs7635439	1.00[EUR][1000 genomes]
rs7648641	1.00[EUR][1000 genomes]
rs7648838	1.00[EUR][1000 genomes]
rs9816040	1.00[EUR][1000 genomes]
rs9820069	0.83[AFR][1000 genomes]
rs9835554	0.80[AFR][1000 genomes]
rs9844260	0.80[AFR][1000 genomes]
rs9848356	0.83[AFR][1000 genomes]
rs9848494	0.83[AFR][1000 genomes]
rs9853361	1.00[EUR][1000 genomes]
rs9854231	1.00[EUR][1000 genomes]
rs9879097	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179726000-179754200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179729200-179741800	Weak transcription	Dnd41	blood
3	chr3:179737000-179741600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:179741000-179745200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:179741000-179750200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:179741400-179742200	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links