Variant report

Variant	rs28414640
Chromosome Location	chr15:93397570-93397571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28392772	0.85[ASN][1000 genomes]
rs28416259	0.85[ASN][1000 genomes]
rs28607270	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4334252	0.81[ASN][1000 genomes]
rs6496996	0.85[ASN][1000 genomes]
rs7165128	0.81[ASN][1000 genomes]
rs7166038	0.85[ASN][1000 genomes]
rs7167754	0.85[ASN][1000 genomes]
rs8032363	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	esv2460744	chr15:93397570-93399018	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93390600-93399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:93393000-93399000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:93396000-93397600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:93396200-93397600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr15:93396200-93397600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:93396200-93398000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr15:93396400-93399000	Weak transcription	A549	lung
8	chr15:93396600-93397600	Enhancers	Spleen	Spleen
9	chr15:93396800-93398400	Weak transcription	Primary T cells from cord blood	blood
10	chr15:93396800-93412400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:93397000-93397800	ZNF genes & repeats	GM12878-XiMat	blood
12	chr15:93397400-93397600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:93397400-93399200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links