Variant report

Variant	rs28607270
Chromosome Location	chr15:93395672-93395673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28414640	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28880667	0.84[AFR][1000 genomes]
rs7181523	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93383800-93396600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:93390600-93399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:93393000-93396000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:93393000-93396000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:93393000-93399000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:93393400-93396200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:93393400-93396400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:93393400-93396600	Weak transcription	Spleen	Spleen
9	chr15:93393600-93396000	Weak transcription	Primary B cells from cord blood	blood
10	chr15:93393600-93396000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:93393600-93396000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr15:93393600-93396000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:93393600-93396200	Weak transcription	Primary T cells from cord blood	blood
14	chr15:93393600-93396200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:93393600-93396200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:93393600-93396200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:93393800-93396000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr15:93394000-93396200	Weak transcription	GM12878-XiMat	blood
19	chr15:93394400-93396200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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