Variant report

Variant	rs7181523
Chromosome Location	chr15:93394084-93394085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93393471..93398396-chr15:93424059..93427661,6	K562	blood:
2	chr15:93391663..93395666-chr15:93425235..93428087,5	K562	blood:
3	chr15:93393520..93395102-chr15:93444710..93447228,2	K562	blood:
4	chr15:93350402..93355574-chr15:93391373..93396356,7	K562	blood:
5	chr15:93392783..93395116-chr15:93420649..93423095,2	K562	blood:
6	chr15:93392816..93394447-chr15:93428512..93430303,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258922	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000173575	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28607270	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28880667	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs8043390	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93383800-93396600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:93384000-93394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:93390600-93399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:93393000-93396000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:93393000-93396000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:93393000-93399000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:93393400-93396200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:93393400-93396400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:93393400-93396600	Weak transcription	Spleen	Spleen
10	chr15:93393600-93394800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:93393600-93396000	Weak transcription	Primary B cells from cord blood	blood
12	chr15:93393600-93396000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:93393600-93396000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:93393600-93396000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:93393600-93396200	Weak transcription	Primary T cells from cord blood	blood
16	chr15:93393600-93396200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:93393600-93396200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:93393600-93396200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:93393800-93394200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:93393800-93396000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr15:93394000-93396200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links