Variant report

Variant	rs28415594
Chromosome Location	chr5:35685358-35685359
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10036432	0.85[EUR][1000 genomes]
rs10044166	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1013155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12514149	0.98[EUR][1000 genomes]
rs13359659	1.00[EUR][1000 genomes]
rs13359710	0.98[EUR][1000 genomes]
rs16902375	0.98[EUR][1000 genomes]
rs16902381	0.98[EUR][1000 genomes]
rs17839377	0.98[EUR][1000 genomes]
rs34307272	0.98[EUR][1000 genomes]
rs56892939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114739	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73082302	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35673600-35693400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:35673600-35694600	Weak transcription	Brain Angular Gyrus	brain
5	chr5:35680000-35698600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:35681000-35707600	Weak transcription	Primary T cells from cord blood	blood
7	chr5:35684400-35686200	Enhancers	Fetal Heart	heart
8	chr5:35684600-35685600	Weak transcription	Fetal Lung	lung
9	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
10	chr5:35684800-35703600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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