Variant report

Variant	rs56892939
Chromosome Location	chr5:35694835-35694836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10036432	0.85[EUR][1000 genomes]
rs10044166	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1013155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12514149	0.98[EUR][1000 genomes]
rs13359659	1.00[EUR][1000 genomes]
rs13359710	0.98[EUR][1000 genomes]
rs16902375	0.98[EUR][1000 genomes]
rs16902381	0.98[EUR][1000 genomes]
rs17839377	0.98[EUR][1000 genomes]
rs28415594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34307272	0.98[EUR][1000 genomes]
rs60114739	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73082302	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35680000-35698600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr5:35681000-35707600	Weak transcription	Primary T cells from cord blood	blood
5	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
6	chr5:35684800-35703600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
8	chr5:35689600-35696800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:35691600-35696600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:35691600-35702400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr5:35691800-35704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:35693200-35695000	Enhancers	Brain Hippocampus Middle	brain
13	chr5:35693200-35696800	Weak transcription	Spleen	Spleen
14	chr5:35693400-35696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:35693400-35698200	Weak transcription	Aorta	Aorta
16	chr5:35693400-35698800	Weak transcription	Lung	lung
17	chr5:35693800-35695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
19	chr5:35694200-35696800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:35694400-35695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:35694400-35695000	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr5:35694400-35695200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:35694600-35695000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:35694600-35695000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:35694600-35695000	Active TSS	Brain Angular Gyrus	brain
26	chr5:35694600-35695200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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