Variant report

Variant	rs28416228
Chromosome Location	chr8:119821569-119821570
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57120226	1.00[AMR][1000 genomes]
rs60528605	1.00[AMR][1000 genomes]
rs73709146	1.00[AMR][1000 genomes]
rs73709147	1.00[AMR][1000 genomes]
rs73709148	1.00[AMR][1000 genomes]
rs73709151	1.00[AMR][1000 genomes]
rs73709152	1.00[AMR][1000 genomes]
rs73709156	1.00[AMR][1000 genomes]
rs73709159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119816600-119823800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:119819800-119822000	Enhancers	NHLF	lung
3	chr8:119819800-119823000	Enhancers	Osteobl	bone
4	chr8:119820000-119821800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:119820000-119825200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:119820400-119823200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:119820600-119821800	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:119820600-119821800	Enhancers	Hela-S3	cervix
9	chr8:119820600-119821800	Enhancers	NH-A	brain
10	chr8:119821000-119821800	Flanking Active TSS	GM12878-XiMat	blood
11	chr8:119821000-119823600	Weak transcription	NHDF-Ad	bronchial
12	chr8:119821200-119822000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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