Variant report

Variant	rs73709159
Chromosome Location	chr8:119669794-119669795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28416228	1.00[AMR][1000 genomes]
rs55829046	1.00[AMR][1000 genomes]
rs57120226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528605	1.00[AMR][1000 genomes]
rs73709145	1.00[AMR][1000 genomes]
rs73709146	1.00[AMR][1000 genomes]
rs73709147	1.00[AMR][1000 genomes]
rs73709148	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709151	1.00[AMR][1000 genomes]
rs73709152	1.00[AMR][1000 genomes]
rs73709156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709158	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891413	chr8:119607281-119679668	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1814789	chr8:119627671-119672134	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv465786	chr8:119627671-119767165	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv612048	chr8:119627671-119767165	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv465787	chr8:119641169-119726242	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470231	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv612049	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119664000-119669800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:119664000-119669800	Weak transcription	HSMMtube	muscle
3	chr8:119668600-119670400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:119668600-119670400	Enhancers	NHDF-Ad	bronchial
5	chr8:119668600-119670400	Enhancers	Osteobl	bone
6	chr8:119668600-119670600	Enhancers	HSMM	muscle
7	chr8:119668600-119670600	Enhancers	HUVEC	blood vessel
8	chr8:119668800-119670000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:119669000-119669800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:119669200-119670200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:119669400-119669800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:119669400-119669800	Enhancers	Hela-S3	cervix
13	chr8:119669400-119669800	Enhancers	NHEK	skin
14	chr8:119669400-119670200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:119669400-119670200	Enhancers	NHLF	lung
16	chr8:119669600-119671400	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links